Transaction Management in Money Pro
Overview
Most of your day-to-day transaction work in Money Pro happens automatically — your bank syncs, transactions categorize, and your reports update. But there are situations that require a more hands-on approach: a third-party payment processor (PayPal, Square) that deposits net-of-fees, a start date that needs to be set to avoid duplicate transactions, owner equity contributions to record, or a historical transaction buried in the Archived view.
This article covers the advanced transaction management workflows that aren't part of everyday use but are essential to know when you need them. For basic expense categorization, income tracking, and CSV import, see the Expense Tracking article.
Money Pro allows users to delete transactions when necessary, such as removing personal transactions mistakenly imported from a linked bank account or fixing incorrectly uploaded manual transactions. Deleted transactions are not permanently erased; instead, they are moved to the Archived section, where they can be restored if needed.
Managing Start Dates for Linked Bank Accounts
The start date for each linked bank account controls how far back Money Pro imports transactions. Setting it correctly keeps your books clean and avoids duplicates.
Why It Matters
- Avoid duplicates when re-linking an account after a disconnect
- Exclude personal transactions from a period before you started using the account for business
- Control the scope of your Profit & Loss and tax reports
How to Change a Start Date
- Go to Expenses or Income → click the gear icon (top right)
- Select Banks & Integrations
- Click on the account you want to update to see its Start Date
- Change the date as needed
- Use the bulk option to update all accounts from the same institution at once
What Happens When You Change the Start Date
- Move it earlier (back in time): Money Pro pulls in all available transactions from that date forward. Transactions appear progressively in Money In / Money Out — no action needed from you.
- Move it later (forward in time): Transactions before the new date are hidden from view. You'll see a confirmation message. The transactions are not deleted — if you move the start date back again, they reappear with their original categories intact.
Best-Practice Start Dates
| Situation | Recommended Start Date |
|---|---|
| Re-linking after a disconnect | The day after the last transaction that successfully synced on the old link |
| Switching account from personal to business use | The first day you began using it for business |
| Previously tracked manually (CSV import) | The day after your last manually entered transaction |
| Not sure | Today — then use CSV import for historical transactions |
Setting a Beginning Balance
In Banks & Integrations, you can set a Beginning Balance for each account to align Money Pro with your actual bank statement balance on your chosen start date. This keeps your Balance Sheet accurate when you're starting mid-period.
Matching Payouts to Invoices (Third-Party Processors)
If your clients pay through PayPal, Square, or another third-party processor, the deposit in your bank account is typically less than the invoice total because the processor deducted fees. This creates a mismatch between your invoice and the actual deposit.
Here's how to reconcile this accurately so your gross income and processing fees are both captured correctly:
Step 1: Create a Manually Tracked Account for the Processor
- Go to gear icon → Banks & Integrations
- Scroll to Manually Tracked Account → click Add Bank Account
- Name it something like "PayPal Clearing" or "Square Clearing"
Step 2: Record the Gross Payment as Income
- Go to Income → + Add Income
- Enter the full invoice amount (before the processor's fee)
- Set the bank account to your new "PayPal Clearing" manually tracked account
- Save
Step 3: Record the Processing Fee as an Expense
- Go to Expenses → Add Expense
- Enter the processing fee amount
- Category: Professional Fees or Bank Charges (or your preferred category)
- Set the bank account to the same "PayPal Clearing" account
- Save
Step 4: Match the Income to the Invoice
- Open the invoice in ZenBusiness Money → Invoices
- Click Add Bank Transaction
- Select the gross income entry you created in Step 2
- Save — the invoice is now marked as Paid at the full invoice amount
Step 5: Convert the Bank Deposit to a Transfer
- Open the actual bank deposit in the Transaction Dashboard (the net amount that landed in your real bank account)
- If it was categorized as income, convert it to a Bank Transfer
- Set the "From" account as your "PayPal Clearing" manually tracked account
- In the "Itemized transactions included in the Payout" field, select the gross income and the fee expense from Steps 2 and 3
The result: your original bank transaction now shows as a "Payout" with the invoice payment and fee linked to it — your books match your actual bank activity, and your income is reported at the gross level with the fee as a separate deductible expense.
Recording a Personal Investment Used to Buy a Business
If you used personal funds to purchase a business, record it as an owner investment (also called owner's equity or capital contribution). Even though the money came from your personal account, it represents capital contributed to the business — not business income.
How to Record It
Step 1: Record Owner's Equity
- In Money Pro, create a credit entry of the investment amount to Owner's Equity
- This reflects your personal contribution to the business
Step 2: Record the Assets Purchased
- Create a debit entry for the same amount to the appropriate asset account(s):
| Asset Type | When to Use |
|---|---|
| Cash | If some funds remained in the business account |
| Fixed Assets | Equipment, property, or long-term assets |
| Goodwill | If you paid more than the fair market value of assets acquired |
| Other Assets | Inventory, prepaid expenses, other asset types |
Why it matters: Recording this as an owner investment (not income) accurately reflects your ownership stake and ensures your Balance Sheet is correct. Treating it as income would overstate your taxable profit. Consult your accountant for the proper asset allocation if you acquired multiple asset types.
Payroll and Contractor Payments
Money Pro does not integrate directly with payroll software. However, if you pay employees or contractors from a linked bank account, those transactions will sync automatically. Tag them with the appropriate categories:
- Payroll — wages paid to W-2 employees
- Commissions and Fees — payments to 1099 independent contractors
These categories appear in your Schedule C expense reports and are reflected in your tax estimates.
Frequently Asked Questions
What's a "start date" and why does it matter?
The start date controls how far back Money Pro imports transaction history from your linked bank account. Setting the correct start date prevents duplicate transactions (especially after relinking), excludes personal history from business reports, and ensures your Profit & Loss and tax estimates reflect the right time period.
I changed the start date forward and lost older transactions. Can I get them back?
Yes. They're hidden, not deleted. Change the start date back to the earlier date and Money Pro will re-import those transactions with their original categories intact. This works as long as your bank still shares that history through Plaid.
Will changing my start date affect my tax reports?
Yes. Tax reports, P&L, and cash flow reports reflect only transactions within your current start date range. If you hide earlier transactions by moving the start date forward, those months drop out of reports. If you need older data in your reports, move the start date back.
How do I handle PayPal or Square payouts that don't match my invoice total?
Use the Manually Tracked Account workflow described in this article. The key principle: record gross income at the full invoice amount, record the processing fee as a separate expense, then reconcile both to the actual bank deposit. This gives you accurate gross revenue and deductible fees without overstating or understating your income.
I see duplicates in my transactions after relinking my bank. How do I fix them?
Set your start date to the day after the last transaction that synced correctly on the old connection. Any transactions that imported from the new link for periods already covered by the old link will be duplicated — delete the duplicates manually. For bulk deletion: Bulk Select → filter by the affected date range → Trash icon. (Bank transfers require individual deletion.)
Does Money Pro work with payroll software?
Not directly — there's no native payroll software integration. However, if you run payroll through a third-party service (ADP, Gusto, etc.) and pay wages from a linked bank account, those payroll transactions sync automatically. Tag them as Payroll and they'll appear in your expense reports.
Can I set start dates for all accounts from the same bank at once?
Yes. In Banks & Integrations, select the bank institution and use the bulk option to apply the same start date to all linked accounts from that institution simultaneously.
Still need help?
Reach us at (844) 493-6249, via live chat on your dashboard, or at support@zenbusiness.com. We're available Monday–Friday during business hours.
When to Delete Transactions
- Removing Personal Transactions – If you have linked a personal bank account and wish to remove personal transactions that were mistakenly categorized as business transactions.
- Fixing Incorrect Imports – If transactions were imported incorrectly, you may need to delete and re-import them properly.
- Handling Bank Transfers – Bank transfers cannot be bulk deleted due to their dual-sided nature. If deleting a transfer, ensure that the corresponding transaction in the linked account is re-categorized correctly.
- Managing Tax Payments – Deleting tax payments affects your expected tax liability. Review transactions carefully before deleting them.
How to Delete Transactions
Deleting Individual Transactions
- Navigate to the Transaction Dashboard.
- Locate the transaction you want to delete.
- Click on the transaction and select Delete.
- Confirm the deletion.
Bulk Deleting Transactions
- Filter Transactions
- Use filters to isolate transactions by account, date range, or category.
- Select Transactions
- Click Bulk Select to choose multiple transactions.
- Transactions categorized as bank transfers cannot be bulk deleted.
- Delete Transactions
- Click the Trash Can icon to remove selected transactions.
- Transactions will move to the Archived section.
Special Considerations for Deleting Transactions
- Bank Transfers: Deleting a bank transfer from one account creates an orphaned transaction in the other account. To resolve this, reclassify the orphaned transaction as a Member’s Capital (for business-to-personal transfers) or Member’s Draw (for personal-to-business transfers).
- Expense Refunds: Some transactions, like refunds, may not allow bulk deletion and need to be deleted individually.
- Tax Payments: If you delete a tax payment, your tax liability calculations will adjust accordingly.
Restoring Deleted Transactions
- Navigate to the Transaction Dashboard.
- Click the Type Filter and select Archived.
- Find the transaction you want to restore.
- Click on the transaction and select Restore.
- Confirm the restoration.
- Bulk Restoring Transactions: Select multiple transactions in the Archived section and use the bulk restore option to bring them back.
Additional Notes
- Rules cannot be used to automatically delete transactions – all deletions must be done manually.
- Archived transactions remain accessible and can be retrieved anytime from the Transaction Dashboard.
- If you need assistance, reach out to support for additional guidance.
By following these steps, you can efficiently manage, delete, and restore transactions in Money Pro, ensuring accurate financial tracking for your business.
