Skip to main content
ZenBusiness

Transaction Management in Money Pro

Advanced transaction workflows — managing bank account start dates, reconciling third-party payouts, recording owner investments, and keeping your transaction history clean.


Overview

Most of your day-to-day transaction work in Money Pro happens automatically — your bank syncs, transactions categorize, and your reports update. But there are situations that require a more hands-on approach: a third-party payment processor (PayPal, Square) that deposits net-of-fees, a start date that needs to be set to avoid duplicate transactions, owner equity contributions to record, or a historical transaction buried in the Archived view.

This article covers the advanced transaction management workflows that aren't part of everyday use but are essential to know when you need them. For basic expense categorization, income tracking, and CSV import, see the Expense Tracking article.


Managing Start Dates for Linked Bank Accounts

The start date for each linked bank account controls how far back Money Pro imports transactions. Setting it correctly keeps your books clean and avoids duplicates.

Why It Matters

  • Avoid duplicates when re-linking an account after a disconnect
  • Exclude personal transactions from a period before you started using the account for business
  • Control the scope of your Profit & Loss and tax reports

How to Change a Start Date

  1. Go to Expenses or Income → click the gear icon (top right)
  2. Select Banks & Integrations
  3. Click on the account you want to update to see its Start Date
  4. Change the date as needed
  5. Use the bulk option to update all accounts from the same institution at once

What Happens When You Change the Start Date

  • Move it earlier (back in time): Money Pro pulls in all available transactions from that date forward. Transactions appear progressively in Money In / Money Out — no action needed from you.
  • Move it later (forward in time): Transactions before the new date are hidden from view. You'll see a confirmation message. The transactions are not deleted — if you move the start date back again, they reappear with their original categories intact.

Best-Practice Start Dates

Situation Recommended Start Date
Re-linking after a disconnect The day after the last transaction that successfully synced on the old link
Switching account from personal to business use The first day you began using it for business
Previously tracked manually (CSV import) The day after your last manually entered transaction
Not sure Today — then use CSV import for historical transactions

Setting a Beginning Balance

In Banks & Integrations, you can set a Beginning Balance for each account to align Money Pro with your actual bank statement balance on your chosen start date. This keeps your Balance Sheet accurate when you're starting mid-period.


Stripe Payout Reconciliation (Automatic)

If your clients pay invoices through Stripe — and your Stripe account is connected in Money Pro under Settings → Payments — Money Pro reconciles Stripe payouts automatically. You don't need to do anything.

When Stripe deposits a payout to your bank account:

  1. Money Pro ingests the deposit via your linked bank account
  2. Tight's engine automatically matches the deposit to all invoices paid during that payout period
  3. Merchant fee expenses are created automatically for each transaction
  4. Each invoice is marked Paid
  5. The bank deposit appears as a nested "payout" row in your transaction list, with individual invoice payments and fees visible underneath

If automatic reconciliation doesn't trigger: Reconnect Stripe under Money Pro → Settings → Payments. Then open the bank deposit and click "Link to Invoice" to manually select the invoices included in that payout.

If the Stripe deposit appears as income in your P&L (and your invoices are already Paid): This is a double-count — the deposit was categorized as income rather than reconciled to the invoices. Fix it by opening the bank deposit → click "Link to Invoice" → select the matching invoices. The deposit reclassifies as a payment settlement and the duplicate income entry is removed from your P&L.


Matching Payouts to Invoices (Third-Party Processors)

If your clients pay through PayPal, Square, or another third-party processor, the deposit in your bank account is typically less than the invoice total because the processor deducted fees. This creates a mismatch between your invoice and the actual deposit.

Here's how to reconcile this accurately so your gross income and processing fees are both captured correctly:

Step 1: Create a Manually Tracked Account for the Processor

  1. Go to gear icon → Banks & Integrations
  2. Scroll to Manually Tracked Account → click Add Bank Account
  3. Name it something like "PayPal Clearing" or "Square Clearing"

Step 2: Record the Gross Payment as Income

  1. Go to Income → + Add Income
  2. Enter the full invoice amount (before the processor's fee)
  3. Set the bank account to your new "PayPal Clearing" manually tracked account
  4. Save

Step 3: Record the Processing Fee as an Expense

  1. Go to Expenses → Add Expense
  2. Enter the processing fee amount
  3. Category: Professional Fees or Bank Charges (or your preferred category)
  4. Set the bank account to the same "PayPal Clearing" account
  5. Save

Step 4: Match the Income to the Invoice

  1. Open the invoice in ZenBusiness Money → Invoices
  2. Click Add Bank Transaction
  3. Select the gross income entry you created in Step 2
  4. Save — the invoice is now marked as Paid at the full invoice amount

Step 5: Convert the Bank Deposit to a Transfer

  1. Open the actual bank deposit in the Transaction Dashboard (the net amount that landed in your real bank account)
  2. If it was categorized as income, convert it to a Bank Transfer
  3. Set the "From" account as your "PayPal Clearing" manually tracked account
  4. In the "Itemized transactions included in the Payout" field, select the gross income and the fee expense from Steps 2 and 3

The result: your original bank transaction now shows as a "Payout" with the invoice payment and fee linked to it — your books match your actual bank activity, and your income is reported at the gross level with the fee as a separate deductible expense.


Recording a Personal Investment Used to Buy a Business

If you used personal funds to purchase a business, record it as an owner investment (also called owner's equity or capital contribution). Even though the money came from your personal account, it represents capital contributed to the business — not business income.

How to Record It

Step 1: Record Owner's Equity
- In Money Pro, create a credit entry of the investment amount to Owner's Equity
- This reflects your personal contribution to the business

Step 2: Record the Assets Purchased
- Create a debit entry for the same amount to the appropriate asset account(s):

Asset Type When to Use
Cash If some funds remained in the business account
Fixed Assets Equipment, property, or long-term assets
Goodwill If you paid more than the fair market value of assets acquired
Other Assets Inventory, prepaid expenses, other asset types

Why it matters: Recording this as an owner investment (not income) accurately reflects your ownership stake and ensures your Balance Sheet is correct. Treating it as income would overstate your taxable profit. Consult your accountant for the proper asset allocation if you acquired multiple asset types.


Recording Expense Refunds and Provisional Credits

If money comes back for a business expense — for example, a vendor refund, returned purchase, chargeback credit, or bank provisional credit — do not leave the incoming transaction categorized as ordinary income. Open the money-in transaction and use Convert To → Expense Refund if that option is available. Choose the same vendor and expense category as the original expense when possible. For the full FAQ, see Record Reimbursed Expenses and Expense Refunds in Money Pro.

This keeps the refund connected to the expense it offsets. For example, if a software subscription charge was categorized as Software and Subscriptions and the vendor later refunds it, record the refund against the same category instead of Services Income. If a bank gives a provisional credit for a disputed transaction and later reverses it, record both sides so Money Pro matches your bank statement.

Handling Reimbursed Expenses on Invoices

If you add a client-reimbursable expense to a Money Pro invoice, link the client payment to the invoice rather than categorizing the bank deposit as new services income. A reimbursement that simply pays you back for an expense may not appear as a separate income line on your P&L, which can be correct when the reimbursement offsets the original cost. For more examples, see Record Reimbursed Expenses and Expense Refunds in Money Pro.

If you mark up a reimbursed expense, only the markup should increase income. Review the invoice, linked expense, and Profit & Loss detail together. If your accountant wants reimbursements shown differently, follow their tax and bookkeeping guidance — Money Pro is recording the workflow, but your tax preparer decides the final presentation.

Advanced Journal Entries, Loans, and Depreciation

Money Pro supports some advanced bookkeeping entries, but it is not designed to replace an accountant for complex assets, loans, depreciation, amortization, or accrual accounting. If you buy property, a vehicle, major equipment, or another long-term asset, ask your accountant whether to expense it immediately or record it as a fixed asset.

A business loan may need to be split between principal and interest. Principal usually reduces a liability such as Loan Payable, while interest is an expense. Depreciation usually requires a journal-entry-style adjustment because no cash leaves your bank when depreciation is recorded. Do not guess at debits and credits for these entries — ask your accountant for the exact entry and keep supporting documents with your records. See Fixed Assets, Loans, Depreciation, and Journal Entries in Money Pro for the dedicated FAQ.

Payroll and Contractor Payments

Money Pro does not integrate directly with payroll software. However, if you pay employees or contractors from a linked bank account, those transactions will sync automatically. Tag them with the appropriate categories:

  • Payroll — wages paid to W-2 employees
  • Commissions and Fees or Contract Labor — payments to 1099 independent contractors

Money Pro does not collect W-9 forms or issue 1099-NEC forms. Use a payroll or contractor payment platform, accountant, or tax professional for contractor tax forms, then use Money Pro to categorize the bank transactions in your books. For the contractor-specific FAQ, see Track Contractor Payments, W-9s, and 1099s in Money Pro.


Frequently Asked Questions

What's a "start date" and why does it matter?

The start date controls how far back Money Pro imports transaction history from your linked bank account. Setting the correct start date prevents duplicate transactions (especially after relinking), excludes personal history from business reports, and ensures your Profit & Loss and tax estimates reflect the right time period.

I changed the start date forward and lost older transactions. Can I get them back?

Yes. They're hidden, not deleted. Change the start date back to the earlier date and Money Pro will re-import those transactions with their original categories intact. This works as long as your bank still shares that history through Plaid.

Will changing my start date affect my tax reports?

Yes. Tax reports, P&L, and cash flow reports reflect only transactions within your current start date range. If you hide earlier transactions by moving the start date forward, those months drop out of reports. If you need older data in your reports, move the start date back.

How do I handle PayPal or Square payouts that don't match my invoice total?

Use the Manually Tracked Account workflow described in this article. The key principle: record gross income at the full invoice amount, record the processing fee as a separate expense, then reconcile both to the actual bank deposit. This gives you accurate gross revenue and deductible fees without overstating or understating your income.

My Stripe payout deposit is showing as income in my P&L, but my invoices are already marked Paid. How do I fix the duplicate?

The deposit was categorized as income instead of being linked to your invoices. Open the bank deposit transaction → click "Link to Invoice" → select the invoices covered by that payout. Money Pro reclassifies the deposit as a payment settlement, which removes the duplicate income entry from your P&L. Only the invoices should generate income — the bank deposit is just the cash movement.

One Stripe payout covered multiple invoices. How do I link it to all of them at once?

Open the payout deposit in your Money In or Transactions tab → click Advanced → select Invoice → check all the invoices included in that payout. Money Pro marks all selected invoices as Paid. You can also do this from each individual invoice: open the invoice → "Add Bank Transaction" → select the same deposit → then add additional invoices on the next screen.

What expense category should I use for PayPal, Square, or Stripe fees?

Use Merchant Fees or Bank & Financial Fees. For Stripe users with automatic reconciliation, Money Pro creates these records automatically. For manual flows (PayPal, Square), enter the fee as a separate expense linked to your clearing account so it appears as a deductible expense on your P&L rather than reducing your revenue.

My clearing account for PayPal / Square shows a non-zero balance. What's wrong?

A non-zero clearing account means a step was missed or amounts don't add up. Check: (1) Does the manual income entry equal the full gross invoice amount? (2) Does the manual expense equal the exact fee the processor charged? (3) Was the bank deposit converted to a Bank Transfer from the clearing account (not left as income)? Adjust any incorrect entry. The clearing account should net to exactly zero once all steps are complete.

I see duplicates in my transactions after relinking my bank. How do I fix them?

Set your start date to the day after the last transaction that synced correctly on the old connection. Any transactions that imported from the new link for periods already covered by the old link will be duplicated — delete the duplicates manually. For bulk deletion: Bulk Select → filter by the affected date range → Trash icon. (Bank transfers require individual deletion.)

Does Money Pro work with payroll software?

Not directly — there's no native payroll software integration. However, if you run payroll through a third-party service (ADP, Gusto, etc.) and pay wages from a linked bank account, those payroll transactions sync automatically. Tag employee wages as Payroll or Wages. Tag independent contractor payments as Contract Labor or Contractors, not Wages.

How do I record a refund for a business expense?

Open the incoming refund transaction and convert it to an Expense Refund if that option appears. Use the same vendor and category as the original expense when possible. This prevents the refund from being treated as new services income and keeps your P&L from overstating revenue.

How do I record a client reimbursement for an expense?

If the reimbursement was billed through a Money Pro invoice, link the client payment to that invoice rather than categorizing the deposit as separate services income. If you added the expense to the invoice at cost, it may simply offset the original expense. If you marked it up, only the markup should increase income.

Can Money Pro handle fixed assets, loans, and depreciation?

Money Pro can record some asset, liability, and journal-entry activity, but complex asset accounting should be done with accountant guidance. Loans often need principal and interest split correctly, and depreciation requires a schedule and journal entry. Ask your accountant for the exact treatment before entering large assets or loan adjustments.

How do I find a transaction I deleted by mistake?

Deleted transactions go to the Archived view — they're not permanently removed. Go to Expenses → Type Filter → Archived, find the transaction, and click Restore. If you bulk deleted a large number of transactions, use the date range and search filters in the Archived view to narrow them down.

Can I set start dates for all accounts from the same bank at once?

Yes. In Banks & Integrations, select the bank institution and use the bulk option to apply the same start date to all linked accounts from that institution simultaneously.


Still need help?

Reach us via live chat on your dashboard or our support team. We're available Monday–Friday during business hours.

  • Was this article helpful?